Blog of Random Thoughts and Pictures

Digitising health records is it really going to be helpful?

September 6th, 2009

I hear again and again all the positives about eHealthcare, it’s seems to be the only way to go, which is why I’ve found this OA paper asking a very interesting question “Do Electronic Health Records Help or Hinder Medical Education?” and I wonder in the same way will electronic health records help or hinder (my) medical anaylsis in the future?
Photo Credit: JasonRogersFooDogG iraffeBee's photostream on flickr http://www.flickr.com/photos/restlessglobetrotter/
It is becoming clear that hospitals are implementing, and in some ways are being forced to implement massive electronic health record (EHR) systems, but in this implementation are they considering the end user …. sorry I should say patients needs, wants and cares in its implementation? And what about the people entrying the data from admin staff to nurses to doctors, are their needs being considered?
On similar massive projects it simply hasn’t been the case and I do wonder!
So to the powers that be, please note the authors conclusion when it comes to the educational side of using EHR

that the mere presence of the EHR will not improve practice quality, and will not make education better or more efficient ………
………. if the EHR is used as a tool rather than an end unto itself, it will improve our education of young physicians as well as the care of our patients.

The Internet of Thingemebobs

August 31st, 2009

So over the coffee break chat leads to a discussion about “The Internet of Things” and how it might pan out …. little radio tags on everything, everything connected to the net, you can interact with everything and you can … you can … build in SECURITY!
Now hang on a second, am I wrong but is there a contradiction going on there, everything in the first case is open as we discuss the possibilities but it always seems to lead to a closed, wall gardened system, which for me may indicate that the vision for an Internet of Things may not be realised.
So do I BELIEVE. I’ve been trying, I have on my desk TikiTags ……. sorry correction in 2008 they were TikiTags, in 2009 they’re TouchTags.

Its a small RFID enabled system in which RFID tags (stickers) once read connects with the touchatag Application Correlation Server (ACS) which manages the link between an RFID tag and a corresponding action to be initiated. The ACS then directs the internet-enabled device to access the appropriate online content and applications. The price point is responsible.
Now I have the device so what to tag ….. hmmm what to tag indeed, what exactly shall I tag, its driving me mad!!!!
The first tag was rather easy I placed it on my WIT card (a card based purchasing system for cafeteria food). The top up system has a related website so when I need to add funds to the card online I just place my wallet over the TouchTag reader and off we go …… and immediately there lays the problem, I have a laptop, the TouchTag reader is USB based, so I have to make sure I have it plugged into the laptop everytime, which after a month just doesn’t happen. Is the solution that the RFID reader has Bluetooth connectivity so the laptop can connect to it wirelessly? But then how do we power the RFID reader?
Also I cannot put any more TouchTags in my wallet, as the reader will pick up all of them and carry out the related action, (I was thinking of 3 tags for 3 cards) but really there can only be one tag per 10cm area.
Okay the next tag ….. I was going for one on the coffee cup, one wipe close the TouchTag reader and a Twitter or IM message pops out “miguelpdl is going for coffee” and then I thought “So What” after 20 message like that and people are just not going to be interested and so all this really does is mark the exact time I go for coffee everyday. Also clean the cup a couple of times and the tag is gone. Is the possible solution that the tags are fabricated into the product?
So right now I’m not a believer …. yet, but I have 16 tags left, if you have some ideas as to where I should place them on things, let me know and I’ll give it a go.
Photo credit ginnerobot http://www.flickr.com/photos/ginnerobot/ on Flickr

Bumper FP7 Call Open Day

July 30th, 2009

What a day for open calls on the FP7 site Transport, Space, Socio-economic sciences and Humanities, Energy, Nanosciences, Nanotechnologies, Materials and new Production Technologies, Research Infrastructures, Environment, Food, Agriculture and Fisheries, and Biotechnology Health and my very own favourite Information and Communication Technologies.
So EU FP7 ICT Call 5 is finally open today with a deadline of 26 October 2009 at 17.00.00 (Brussels local time) and an indicative budget: EUR 732 million
FP7- ICT -2009-5 is going to cover

Challenge 1: Pervasive and Trusted Network and Service Infrastructures

ICT 2009.1.1 The Network of the Future
ICT 2009.1.2 Internet of Services, Software & virtualisation
ICT 2009.1.3 Internet of Things and enterprise environments
ICT 2009.1.4 Trustworthy ICT
ICT 2009.1.6 Future Internet Experimental Facility and Experimentally-driven Research
Challenge 3: Components, systems, engineering
ICT 2009.3.1 Nanoelectronics Technology
ICT 2009.3.5 Engineering of Networked Monitoring and Control Systems
ICT 2009.3.7 Photonics
ICT 2009.3.9 Microsystems and Smart Miniaturised Systems
Challenge 4: Digital Libraries and Content
ICT 2009.4.2 Technology- Enhanced Learning
ICT 2009.4.3 Intelligent information management
Future and emerging technologies
ICT 2009.8.4 Human-Computer Confluence
ICT 2009.8.5 Self-Awareness in Autonomic Systems
ICT 2009.8.6 Towards Zero- Power ICT
ICT 2009.8.9 Coordinating Communities, Plans and Actions in FET Proactive Initiatives
ICT 2009.8.10 Identifying new research topics, Assessing emerging global S&T trends in ICT for future FET Proactive initiatives
Horizontal support actions
ICT 2009.9.2 Supplements to support International Cooperation between ongoing projects
ICT 2009.9.5: Supplements to Strengthen Cooperation in ICT R&D in an Enlarged Europe
The competition in this call is going to be massive, you have on avaerage a 16% chance of being successfully from the call and when looking at the stats from EU FP7 Call 4 getting scored above the threshold will not be an easy task!

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Interactive data visualisation

July 19th, 2009

While compiling my last entry on the map of science it did make me think that in this day and age data visualisation in the ICT world should be more interactive, like this visualisation of the Linux kernel.
What caught my eye was this work by Tony Hirst on visualising the lap time data from Australian F1 grand-prix in 2009 using ManyEyes, which has led onto some very interesting social commentary on the visualisation of UK MP’s expenses.
But is all these cases of visualisation research an after the fact activity with steady data sets and results.
Copyright of UC Regents 2009
But I wonder can macro architectural network patterns married with micro network component specifications and fused in a data visualisation tool, be a way to address future Internet design, pre-deployment?
And to make this happen, what exact “steady” data would I need to realise such a wonder?

Map of Science

July 12th, 2009

I’ve always had an interest in data visualisation, one of my most viewed blog entries is on a data visualisation of the relationships between different scientific disciplines, which is currently framed and hanging on my home office wall (the only one!), so this recently published map of a journal network that outlines the relationships between various scientific domains has had me interested again.
This time the data visualisation is based on the collection

of nearly 1 billion user interactions recorded by the scholarly web portals of some of the most significant publishers, aggregators and institutional consortia. The resulting reference data set covers a significant part of world-wide use of scholarly web portals in 2006, and provides a balanced coverage of the humanities, social sciences, and natural sciences. A journal clickstream model, i.e. a first-order Markov chain, was extracted from the sequences of user interactions in the logs. The clickstream model was validated by comparing it to the Getty Research Institute’s Architecture and Art Thesaurus. The resulting model was visualized as a journal network that outlines the relationships between various scientific domains ….

and is full recorded in a paper by Johan Bollen, Herbert Van de Sompel, Aric Hagberg, Luis Bettencourt, Ryan Chute, Marko A. Rodriguez, Lyudmila Balakireva, “Clickstream Data Yields High-Resolution Maps of Science”
What results is a map that

represents the structure of scholarly activity from an observational perspective, not from a prescriptive or motivational one. User interactions with scholarly web portals are shaped by many constraints, including citation links, search engine results, and user interface features. In this paper we do not attempt to explain or motivate these interactions, but merely to demonstrate how their overall structure can be charted and described from clickstream maps of science.

Watch out the image is large
The PLoS site related to this paper has some interesting comments and the related article from the NY Times: Map of Knowledge offers some further insight from the authors.

Innovation, research & innovation what’s the formula for a smart economy?

July 5th, 2009

There’s a debate raging at the moment in Ireland about the smart economy and it appears in these undoubtly tough times we are struggling with the innovation idea.
Photo Credit: miguelpdl on flicker http://www.flickr.com/photos/miguelpdl/3691759174/ industry collaboration and academic research or is the pursuit of IP a distraction.
Can it be that shearing Ireland’s science budget would be a mistake of monumental proportions because the figures are only coming to light now, or are these really all the facts and figures.
Maybe this new Innovation Taskforce will get to the bottom of it and set us on the right track, that’s of course assuming that Ireland cares!
At least the science parks are in place, which maybe the key.
I leave these thoughts with a quote via @Leslie Lamport

Jean Renoir wrote in his autobiography that someone once asked his father, the painter Auguste, why he painted from nature. Renoir père answered that if he were to try painting a tree in the studio, he would be able to draw four or five different kinds of leaves, and the rest would all look like them. But nature creates millions [his count] of different kinds of trees.

The pencil so simple, so ubiquitous and so much history

June 28th, 2009

I recently finished an intriguing book with the history of the pencil … yes the pencil.


Maybe it doesn’t sound too exciting but really the story touches on the pencil as it emerges as a new writing technology, to the over-mining of plumbago and over-cutting of cedar trees its base components.
The need for research, development and innovation in the creation of new writing lead, the centuries of secrecy around that combination of graphite & clay mixture in the lead (Conte).
How the industrial revolution created a situation were there was 10 pencils for everyone on earth, the subsequent price fixing, international trade wars, standardisation (of lead grading), regulations and industrial consolidation.
To the threat of the mechanical pencil and ink pens, then typewriters, computers and many others and yet 4 centuries later I look at my desk at work and see 5 pencils, I’ve no idea were they have come from, who made them or how, but I know why they are there, I’ll continue to use them for scribbling transient notes and now at least I have a little more insight on the pencils history.

The greatest scientific impact from Ireland in the past 5 years is in…..

June 21st, 2009

…. Agricultural Sciences.
Photo Credit NZMonkey on Flickr http://www.flickr.com/photos/nzmonkey/
And that’s according to Thomson Reuters National Science Indicators, 1981-2007.
This is were Thomson Reuters have taken

Ireland’s world share of science and social-science papers over a recent five-year period, expressed as a percentage of papers in each of 21 fields in the Thomson Reuters database.

Ireland’s citation impact compared to the world average in each field, is also highlighted were

Ireland exceeded the world average by 15% (3.38 citations per paper for Ireland versus a world mark of 2.93 citations) [in Agricultural Sciences]. Ireland also scored well in relative impact in immunology (26% above the world mark), physics (23% above), materials science (+22%), and chemistry (+15%).

.
Looks like Ireland will have to pull its socks up when it comes to Computer Science and Mathematics and when it comes to Economics & Business, well it looks like this report came too late!
But when I look at this topic of impact factors, citations and the h-index a little closer, things are not so clear cut, to a point of being fairly questionable.
Which has lead me to this very interesting paper by Allen L, Jones C, Dolby K, Lynn D, Walport M (2009) Looking for Landmarks: The Role of Expert Review and Bibliometric Analysis in Evaluating Scientific Publication Outputs. PLoS ONE 4(6): e5910. were the authors were looking

To compare expert assessment with bibliometric indicators as tools to assess the quality and importance of scientific research papers.

And they found that

When attempting to assess the quality and importance of research papers, we found that sole reliance on bibliometric indicators would have led us to miss papers containing important results as judged by expert review. In particular, some papers that were highly rated by experts were not highly cited during the first three years after publication. Tools that link expert peer reviews of research paper quality and importance to more quantitative indicators, such as citation analysis would be valuable additions to the field of research assessment and evaluation.

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After all of that I’m left wondering, have you got the h-Factor?

The Internet of things, but where do they go?

June 15th, 2009

The Chumby, an interactive mediaplayer that streams content from the Internet into chumby widgets. They’re not offically shipped to my home location so I picked one up from ebay and I must admit it got here quick flash (excuse the pun Chumby uses FlashLite for the widgets).
Now you can read the hype over and over, and I did and starting to believe it, until I got my hands one.
Now don’t get me wrong, it looks great, and you can connect it to accounts on flickr, twitter, facebook, picasa, urban quotes of the day and you can stream internet radio and I thought all these features would be great ….. but the first problem I found is that it is really a glorified alarm clock, and with the fact that there is some distance between my wifi router and the bedroom the Chumby just wouldn’t connect to the network and when the Chumby cannot connect to the network its just unusable ….. even as an alarm clock.
I moved things around, got a signal in the bedroom and after a week I realised the Chumby was getting no eye time …… I go to sleep in the bedroom, read books/magazines if I get the chance but sitting beside my bed waiting for the Chumby channels to change just isn’t compelling enough, so I decided to move it to the living area.
First to the living room …. after 1 week nope, no good the TV already takes all the attention.
Second to the hall beside the phone … after 2 weeks nope, very passing glances but no eyeball time
In a corner in the Kitchen …. after 2 days nope too far away to read anything on the screen, to see what’s worth reading
On top of the microwave in the Kitchen ….. perfect it’s lasted 2 months and gets more passing glances morning, evening and late at night.
Photo Credit miguelpdl on Flickr
And for me the best widgets on Chumby, are the FaceBook photo feature, which displays friends pictures once they push them out and the Yo Mama is So Fat jokes widget.

There are no communication research topics in J, Y or Z

June 6th, 2009

At the start of each year (usually the January issue) I have a little look at the full subject index page for the previous years articles in the IEEE Communcations magazine, just in case I missed an article I was interested in, and something pops out at me. In carrying out this task recently I noticed for 2008 there were no communication research topics under the alphabet heading of J, Y or Z. So I’ve checked the 2007 index and the same again, no topics under J, Y or Z.
Shouldn’t there be a paper on “Jitterless yobibyte service bus for a ZSL” or “Zoning of jumbo frame networks: Yobibyting more than you can chew”. Hey I might trademark that last one!
Photo Credit: http://www.flickr.com/photos/otolithe/ on Flickr